PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g06920.1
Common NameLR48_Vigan02g194300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 336aa    MW: 38770.5 Da    PI: 7.2499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g06920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37.3e-5451331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eelv +yLk+k+++ k++l +vi e+d+yk+ePwd++      +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+v
  Vang06g06920.1   5 VPPGFRFHPTEEELVGYYLKRKINSLKIDL-DVIVEIDLYKIEPWDIQDrckLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAV 98 
                     69****************************.99**************952432234677************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ k++ +g++ktLvfykgrap+g+ktdW+mheyr 
  Vang06g06920.1  99 MT-KNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRH 133
                     **.8999***************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-583169IPR003441NAC domain
PROSITE profilePS5100556.6145169IPR003441NAC domain
PfamPF023652.7E-286132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MESCVPPGFR FHPTEEELVG YYLKRKINSL KIDLDVIVEI DLYKIEPWDI QDRCKLGYEQ  60
QNEWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKAVMT KNRIIGMRKT LVFYKGRAPN  120
GRKTDWIMHE YRHQTSEHGP PQASFFSRLL STIYNSMEEG WVVCRAFRKP SPSHRQGYEA  180
WCSSSSHQQH FYKDQSFARP LSIADILNET NVPHHPAEAP SFSLPFNSDQ QHFILPNQTV  240
MDKQLIELPQ LDSPTASFAM KECNQQHQNG LRNEEYCSDE RSNSSAQGID WKSLDNLFGS  300
QLSDTAYFSH PNLPLMMPHN NHDQASHILG CFPDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48216912168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512644.10.0PREDICTED: NAC domain-containing protein 30
SwissprotQ9C8W91e-111NAC30_ARATH; NAC domain-containing protein 30
TrEMBLA0A0L9TYX50.0A0A0L9TYX5_PHAAN; Uncharacterized protein
STRINGGLYMA20G31551.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71383247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-101vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]